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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015915819.1_cds_XP_016465574.1_58515
CDS Infomation

[gene=LOC107788403] [db_xref=GeneID:107788403] [protein=HEAT repeat-containing protein 6 isoform X4] [protein_id=XP_016465574.1] [location=join(106954..107078,107384..107633,107719..107786,107945..108014,108142..108465,115789..115868,115976..116027,116424..116577,117962..118049,127243..127345,129250..129340,129680..129777,130027..130200,136634..136882,137624..137719,137825..137919,138333..138396,138492..138582,138675..138739,138851..139102,139240..139313,140521..140627,141043..141053)] [gbkey=CDS]
Sequence

ATGAGTTCTAGTTCTTGGCCTCTTTTATTTGACTCCTTAAGGAGCTTAGTGGAAACTCTT
GAGAAAGCTAATACTGCTGATGTTTCCGTGGTTGGAGCCATAAAACAATGTTCTGAGACT
TCAAGATGTCTTTTGGCTGCAAGTGAAAGAACAGGTTTGTTAGCTGAACACTTGCAGCTG
CTAAATTTCCTCCTCAGAATTGTTTCCAGTCTTCATCCCGAGGCAAGTAATTTGTCAAAA
TCAAGAGGCAAGAAAAAAATATCTGGTTATAACAGTTCATGGGAAGTTGAAATAGTAGCT
TTTACTATGATTGGTGAACTATATTCGAGATTTGCATCTTCTTTACCAGTTGATACTTGG
CAATCAACAATTGAGATCCTTAGACATATTTTGGAAACGGTGGCATCTAAAGGCCATATT
AAGGAAGATGGAGCCACTGCCAGGTTTTATACCTCGCTTCTACATTGCCTGCACTTGGTT
CTTACAGATGCCAAGGGATCGTTGTCTGGCCATGTGGCAGGTCTTGTTGTGGCTTTGAGG
AATTTTATTCATTATGGCCTTACTAATAAATCACACGATATGTTTGCCATTGCTGATAAG
AAGCAGATTACTTCTGTTAGCATGAAGCCAGATTTGGCAGAATCAACAAAATCACAAACG
GGCCGATATAGGCCTCCACACTTACGAAATAAAAATCTGAAAAATTTTCAGTTGGAGGAT
GAGAAATCTCTAACACTATCATCTGATTCAGAAAACAGTGATAGTGATGGATCAGGGCGG
GGTACTTGCAATACACCCTATGCTAAGACTAGATTAGCTGCGATCATCTGTATCCGGGAC
CTTTGTCTAGCTGATCCCAAATCATTTACGGCTCAGTGGACAATGCTTTTACCATCCAGT
GATGTCCTACTGCCAAGGAGGTATGAGGCAACACTGATGAGTTGTTTGCTGTTTGATCCA
TTTCTAAAGGCACGGGTTGCAGCTGCCTCTGCCATCAGGGCTATGCTGGATGCTCCGTCA
TCTGTTTTTCTTCAAGTTGCAGAATTCAAGGAATCAACTAAATGTGGGTCATTTATGGCA
CTCTCCAGCTCTCTTGGGCAGATTTTAATGCAATTACACTCAGGGACTTTATACTTGATC
AAAAGTGAAACGCACAGTGGATTGCTAGCGTCCTTGTTCAAAATTTTGATGCTTTTGTTA
TCATCCACACCGTATTCTAGAATGCCTCGGGAATTGTTGCCAACGGTTCTCTCTTCTATT
CAAGCTAGGATTGAAGTAGGCTTTTTGTTCAGAAGTGACCAAAATATCCTATTGGCGACA
GCAATCAACTGCTTGAGTGCAGCCTTGTCAGTCTCACCATTTTCAGTTGAAGTCAGAGAC
ATGCTTATGGCAGAAGTATCAGCAGGTTTCATCAGTTCTCAATCGAAGTCGGGCATTTTG
TCTACGTTGTTTCGATATTGTGAACCAGGAGTAAGCCCGTCTGTGGGTTTTGAGGCACTT
CAGGCCGTCAGATCTGTGGCACACAACTATCCTAGCGTGATTGTCTTGTGTTGGGAAAAG
GTTTCCCTTTTAGTTCATGGATTCTTGACTTTCTCTCCTGAGACGAGGTCGTGGAGGGAC
AATGTTGGAAACTTAAATGAGCCAATTGGAGAAAAAGTCATAACCGCTTCAATCAAGGTT
TTGGATGAATGTCTTCGTGCAATCTCTGGATTTAAGGGGACTGAAGATCCTTCGAGTGAT
ATATCACTTGATAGCCCTTTCACATCTGACTATGTCAAATTAAAAACAATCTCGTCGGCT
CCATCTTATGGGCCACATGATTGTGCAGTAAATAATGATGGAGCTGAAAAGCTGTCAGGA
AGGGAGCAGTGGCTGGAAGCAATTGTTAGGCATTTGCCTCTTATCATTCAGCATTCTTCT
CCAATGGTGAGGGCTGCGTCAGTTACTTGTTTTGCTGGAATAACTTCCACAGTTTTCTTT
TCTCTGCCAAAGGATAAACAAGACTTCATCCTGAGCACTTGTGTTAAAACTGCAAGAAGT
GATGAGGTTCCAAATGTTAGATCAGCTGCTTGTCGTGCTATTGGTGTAATTGCTTGTTTT
CCACACATTTTCCAGAGTGCAGAGCTTTTTGACAAGTTCATTTCTCCTGCTGTGCACAAT
AGTAATGATTCCTCAGTATCGGTACGCATAACAGCCTCGTGGGCTTTAGCTAATATATGT
GATGCACTTCGCCACCATGTTGATGTACATGGATTTGAGAACTTCTCTTCAGTGAGCTCA
CAGTCTATCTCCTTGCTGATGAACTGTGCTTTGCACCTTACAAACGATAATGACAAGGTC
AAAGCAAATGCTGTAAGAGCATTGGGTAACCTTTCAAGAGTTGTTAGGCTTTCAAGTCGA
TCGTGTGCTTATGATAGGCAAGCAGATCCAATGGTCGTATCTTCTGGGGGCAAGCCCACA
AAAAATTTGTCCGTCTCCGAGGATCTGGGAGGTTGTTCAAGTGCACATAACACTCCCTTG
GAAAATTTTAAATGGCTTGAGAAGATGGTGCAGGCATTTATTTCTTGTGTTACAACTGGA
AACGTTAAGGTACAATGGAATGTTTGCTACTCATTGAGCAACTTGTTTTCCAATCCAACA
TTGAAGCTGGAAAACATGGTTTGGGCATCATCAGTTTTTAGCATTTTGTTGCTACTCCTT
CGTGATTCTTCTAATTTTAAGATCAGGATACAAGCAGCTGCTGCTTTGGCTGTTCCAGCA
TCCTCAAATGATATAGGTTGA

Peptide Sequence

PEP ID

XP_016465574.1
PEP Infomation

PREDICTED: HEAT repeat-containing protein 6 isoform X4 [Nicotiana tabacum]
Sequence

MSSSSWPLLFDSLRSLVETLEKANTADVSVVGAIKQCSETSRCLLAASERTGLLAEHLQL
LNFLLRIVSSLHPEASNLSKSRGKKKISGYNSSWEVEIVAFTMIGELYSRFASSLPVDTW
QSTIEILRHILETVASKGHIKEDGATARFYTSLLHCLHLVLTDAKGSLSGHVAGLVVALR
NFIHYGLTNKSHDMFAIADKKQITSVSMKPDLAESTKSQTGRYRPPHLRNKNLKNFQLED
EKSLTLSSDSENSDSDGSGRGTCNTPYAKTRLAAIICIRDLCLADPKSFTAQWTMLLPSS
DVLLPRRYEATLMSCLLFDPFLKARVAAASAIRAMLDAPSSVFLQVAEFKESTKCGSFMA
LSSSLGQILMQLHSGTLYLIKSETHSGLLASLFKILMLLLSSTPYSRMPRELLPTVLSSI
QARIEVGFLFRSDQNILLATAINCLSAALSVSPFSVEVRDMLMAEVSAGFISSQSKSGIL
STLFRYCEPGVSPSVGFEALQAVRSVAHNYPSVIVLCWEKVSLLVHGFLTFSPETRSWRD
NVGNLNEPIGEKVITASIKVLDECLRAISGFKGTEDPSSDISLDSPFTSDYVKLKTISSA
PSYGPHDCAVNNDGAEKLSGREQWLEAIVRHLPLIIQHSSPMVRAASVTCFAGITSTVFF
SLPKDKQDFILSTCVKTARSDEVPNVRSAACRAIGVIACFPHIFQSAELFDKFISPAVHN
SNDSSVSVRITASWALANICDALRHHVDVHGFENFSSVSSQSISLLMNCALHLTNDNDKV
KANAVRALGNLSRVVRLSSRSCAYDRQADPMVVSSGGKPTKNLSVSEDLGGCSSAHNTPL
ENFKWLEKMVQAFISCVTTGNVKVQWNVCYSLSNLFSNPTLKLENMVWASSVFSILLLLL
RDSSNFKIRIQAAAALAVPASSNDIG

Transcript Sequence

Gene sequence data has not been registered.